PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G023000.2
Common NameB456_013G023000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 240aa    MW: 27556 Da    PI: 9.1719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G023000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29e-061421811155
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  Gorai.013G023000.2 142 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 181
                         7999**************99.....9****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.734131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-11142198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-4142185No hitNo description
Gene3DG3DSA:4.10.280.101.3E-8146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPYLDVLMQM ESKGNVNGDA FSMEPKIFYN DNQIRDGAFA IPYQSHFNSN FLQDYEYGSS  60
NFDNNFQQSM SLSSKLAIPY LESESIQNGR KREIGFNNDP NTALDERNKN KRKKLLTSFE  120
QSHRSSQERT EIKDFRLNMP VRRSQKLSDK ITALQKLVSP YGKTDTASVL QEASLYIKLL  180
QEQIQMLSSS YKSLRAIHPQ EIGKKQEDLK SRGLCLVPIS FTQRVTKEEQ SSLENLNNM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461279.11e-175PREDICTED: uncharacterized protein LOC105781290
TrEMBLA0A0D2S6U11e-177A0A0D2S6U1_G
TrEMBLA0A0D2V8541e-176A0A0D2V854_G
STRINGVIT_13s0019g00540.t013e-44(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-22bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]